Changed RigidBodyManipulator.bodies from std::vector<RigidBody> to std::vector<std::unique_ptr<RigidBody>> in preparation for adding a std::unique_ptr<DrakeJoint> member to RigidBody.

Conflicts:
	systems/plants/constructModelmex.cpp
Now creating DrakeJoints in constructModelMex and storing std::unique_ptrs to them in RigidBody objects.

Conflicts:
	systems/plants/constructModelmex.cpp
Now setting DrakeJoint in URDFRigidBodyManipulator as well.

Conflicts:
	systems/plants/constructModelmex.cpp
Cleanup.
update unitTest.m to support matlab packages/namespaces
remove extra folder
more docs
Add missing include.
Merge pull request #346 from rdeits/rd-unittest-fix

unitTest package support
resolves #179.  mex rigid body constraints now use the updated drake mex pointer logic, which locks the mex file until all objects are deleted.
Fix typos in parseBodyOrFrameID
Fixes for RelativeQuaternion.

Make frameA/B property names match RelativePosition. Also check for empty
frames in kinematicPathJoints.
Fix x_cell size in evalContainedFunctions.

This was missed when modifying the class for nested MultiCoordinateFrames.
Add testParseBodyOrFrameID
Merge pull request #352 from avalenzu/drake-function

Bug fixes from playing with DrakeFunctions
add random seed because the build server would fail once in a blue moon
Make warnOnce warn once per instance.

The disabled_msgids map was being default initialized in the classdef of
WarningManager. Because containers.Map is a handle class, this means that all
WarningManager objects shared the same disabled_msgids map. So rather than
warning once per instance of a class containing a WarningManager, we were only
warning once ever. The fix is to initialize the disabled_msgids in the
constructor instead.
Update CollisionFilterGroups for removed links

The child links need to be removed from any collision filter groups they belong
to and the names of the parent links need to be updated.

Fixes #164.
Add warning for discarded CollisionFilterGroups.

If the child link in a removed joint belongs to a filter group and the parent
does not, then
  * if the parent has no contact shapes, the welded link will belong to the group
  * if the parent has contact shapes, the welded link will not belong to the
    group and the user will be warned.
Add documentation for the exitflag in solver function