5.1DEV__16: Ordered Map implementation

    a.k.a. `NamedValueList`

Along with the introduction of the MapPair class in
Bio-Formats, the new omero.api.NamedValue and NamedValueList
definitions provide for ordered maps, i.e. lists of
string-string pairs. Duplicates are permitted, though
null values are not.

This removes the need to use the special HQL syntax for
index/value look ups and instead standard join logic can
(must) be used.

A new marker interface `ome.model.internal.Primitive` was
introduced so that the `ome.model.units.Unit` implementations
as well as `ome.model.internal.NamedValue` can be handled in
the same way.

Currently open questions include:
 * should `NamedValue`'s value' be generic or simply a string?
 * should it be nullable? (if not, then it need not be an RType)
 * is the `NamedValue` naming better than the `MapPair` naming?
Fix flake8 error
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 3141 (jstree upgrade (Functionality Review Only))
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 3215 (5.1DEV__16: Ordered Map implementation)
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 3086 will-moore 'Create image by tiling 12459' (user: will-moore)
  # PR 3216 joshmoore 'Misc DB fixes (5.1DEV__17)' (label: exclude)
  # PR 3208 sbesson 'Update the OMERO install script to test Web login with CSRF (rebased onto develop)' (user: sbesson)
  # PR 3207 will-moore 'General pane web 2' (user: will-moore)
  # PR 3181 joshmoore 'Update to Hibernate 3.6 (See trac2570)' (label: exclude)
  # PR 3190 dominikl 'Insight units' (user: dominikl)
  # PR 2363 dominikl 'Java Gateway API' (label: exclude)
  # PR 2182 joshmoore 'Read only flag' (user: joshmoore)
  # PR 3160 ximenesuk 'Try search repeatedly until success' (user: ximenesuk)
  # PR 3206 joshmoore 'c++ green!' (user: joshmoore)
  # PR 3201 dominikl 'Removed generic type from JComboBox (1.6 compliance)' (user: dominikl)
  # PR 3157 jburel 'Reset password' (user: jburel)
  # PR 3187 will-moore '5 0 6 rebase' (user: will-moore)
  # PR 3199 snoopycrimecop 'Update develop submodules' (user: snoopycrimecop)
  # PR 3198 manics ' Tables metadata really check the size after close' (user: manics)
  # PR 3000 jballanc 'Update artifacts for Lucene, Hibernate, and Spring' (user: jballanc)
  # PR 3213 sbesson 'Flake8 OMERO.web feedback' (user: sbesson)
  # PR 3133 dominikl 'General Pane alignment' (user: dominikl)
  # PR 2585 aleksandra-tarkowska 'making time_zone and first_day_of_week configurable' (exclude comment)
  # PR 3217 aleksandra-tarkowska 'Viewer fixes' (user: aleksandra-tarkowska)
  # PR 3204 sbesson 'Allow to set feedback URL via environment variable' (user: sbesson)
  # PR 3109 dpwrussell 'Disable keyboard navigation (up, down, left, right) for jquery tabs' (user: dpwrussell)
  # PR 3214 ximenesuk 'Change xfail markers to broken' (user: ximenesuk)
  # PR 3156 aleksandra-tarkowska 'Templates cleanup' (user: aleksandra-tarkowska)
  # PR 3042 will-moore 'Download dataset project' (user: will-moore)
  # PR 3098 aleksandra-tarkowska 'Metadata reimport' (user: aleksandra-tarkowska)
  # PR 3069 aleksandra-tarkowska 'Scalebar' (user: aleksandra-tarkowska)
  # PR 3037 joshmoore 'Group sudo' (user: joshmoore)
Already up-to-date.

Merged PRs:
  # PR 3141 dpwrussell 'jstree upgrade (Functionality Review Only)'
  # PR 3215 joshmoore '5.1DEV__16: Ordered Map implementation'

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1366 ctrueden 'Miscellaneous cleanup' (user: ctrueden)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 1426 qidane 'Initial Rendering Definitions schema' (exclude comment)
  # PR 1432 melissalinkert 'Metamorph: fix description delimiter to account for XML sanitization' (user: melissalinkert)
  # PR 1420 qidane 'Updating samples and adding units samples' (user: qidane)
  # PR 1383 LeeKamentsky 'Fix im3 metadata' (user: LeeKamentsky)
  # PR 1423 melissalinkert 'TIFF: attempt to correct incorrectly stored StripByteCounts values' (user: melissalinkert)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1431 rleigh-dundee 'Specification: Add XML catalogues for released schemas' (user: rleigh-dundee)
  # PR 1422 melissalinkert 'Zeiss TIFF: fix used file list when expected files are missing' (user: melissalinkert)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (user: melissalinkert)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 1428 rleigh-dundee 'C++: Incremental metadata processing work' (user: rleigh-dundee)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
  # PR 1365 ctrueden 'PrairieView 5.2 fixes and improvements' (user: ctrueden)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1362 melissalinkert 'Make FormatReader's RandomAccessInputStream transient' (user: melissalinkert)
  # PR 1421 jburel 'Units mock' (user: jburel)
  # PR 1433 melissalinkert 'Initial version of I2I reader' (user: melissalinkert)
  # PR 1434 rleigh-dundee 'cpp: cmake: RegexChecks: Improve include usage for portability' (user: rleigh-dundee)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1430 sbesson 'Matlab units metadata' (user: sbesson)
  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes' (user: melissalinkert)
Updating e88645d..80e0ffe
Previously merged:
  # PR 1427 rleigh-dundee 'C++: Path handling and installation location introspection'
  # PR 1429 qidane 'Change working distance back to UNITS.MICROM'
  # PR 1419 sbesson 'Flake8 Bio-Formats Python files'
  # PR 1424 melissalinkert 'DICOM: fix dimension population for multi-series filesets'
  # PR 1385 rleigh-dundee 'C++: Add TIFF reader'

Merged PRs:
  # PR 1418 rleigh-dundee 'IFormatReader: Remove deprecated methods'
  # PR 1425 jburel 'Convert tolerance to NonNegativeInt to NonNegativeFloat'
  # PR 1435 joshmoore 'Ordered MapPairs implementation'

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Updating 436c249..84e4427
Previously merged:
  # PR 1031 aleksandra-tarkowska 'csrf protection (rebased onto develop)'
  # PR 1034 hflynn 'Adding link to import scenarios to cli import doc'
  # PR 1032 hflynn 'Fixing use of :option: for new sphinx'

Generated by OME-5.1-breaking-push#203 (http://ci.openmicroscopy.org/job/OME-5.1-breaking-push/203/)