Bump version.
Bump dev version.
Don't output RAT.
Doc updates.

And remove deprecated n_cpus parameters.
Remove deprecated code.
Add more info to summary output.
Update examples.
Merge branch 'development' of github.com:azvoleff/teamlucc into development

Conflicts:
	R/auto_classify.R
Fix output formats from rasterEngine calls.
Fix rd file name.
Update filename setup for spatial.tools.
Add C++ change direction calculation.
Switch to block-by-block processing - rasterEngine wasn't working.
Update to correctly output chosen filetype.
Fix arg order.
Fix chg_dir indexing.
Bump version.