Created class structure for enriched chem objects.
Integrates RichAtomSet into structure.
Integrating first part of separate Structural Analysis.
First part of separate Structural Analysis integrated.
First part of separate Structural Analysis fully integrated.
Removed superfluous code.
Factored out the CML generation.
Separates different structure maps.
Refactored connection computation.
Fully refactors structural analysis.
Fully refactors structural analysis.
Moves SRE annotation to structural analysis.
Finalised Annotation XML element.