Test hotfix for spectra-cn issue, where we are not including all high copy kmers in a final band of the spectra-cn plot.
Changed floats to doubles in sect.  Theoretically, we may have got imprecise mean coverage estimates when using really big sequences, such as whole chromosome length.
Reducing the autoconf version limit to 2.63
Dropped autoconf required version to 2.59.

Also added a little feature so that the user can control whether or not to output sect count files.
Removed call to auto configure when running the autogen.sh script.

Fixed issue where title could not be overriden by the user in the plotting
tools.

Changed short option name for the "list" option in spectra-mx plot tool to
'c'.  This is to avoid a conflict with the "title" option.

Provided a more descriptive error message if the user enters a malformed
value for the "list" option in the spectra-mx tool.

Removed call to set the size ratio to 1 in the spectra-mx tool
Finish Hotfix-PlotSpectraCnCatchAll.  Actually includes all changes for V1.0.4 and V1.0.5.
Finish Hotfix-PlotSpectraCnCatchAll.  Actually includes all changes for V1.0.4 and V1.0.5.
Added additional check when specifiying the row or column indicies in the spectra-mx list option.
Finish Release-1.0.5
Merge remote-tracking branch 'GITHUB/master' into feature/Feature-ReadsFilterTool

Conflicts:
	.gitignore
	configure.ac
	src/filter/.gitignore
	src/filter/kmer/.gitignore
	src/filter/seq/.gitignore
	src/inc/.gitignore
	src/sect/sect.hpp