Review comments
Full directory path in PHIX_ROOT
Full filename in PHIX_FILE
Merge pull request #193 from KateTaylor/reference_name_changes

Review comments
make logic reader-friendly, fix spelling, add test data files to MANIFEST, to fix test Travis failure make dependency of json serialization on JSON::Any explicit
npg dev url is set to the url of the dev server that is actually used for API calls; psd next release dev url replaced with training url, RT#412417
fix one more expected url in tests
Merge pull request #194 from mgcam/status_object

wrapper object and script for writing status to a file
DBIx binding for updating run and lane status refactored to remove code duplication and make these procedures logically symmetrical; DBIx binding - added ability to pass date when updating run and lane statuses; status monitor - callback for saving statuses to the database
POD; list explicitly dependencies of DBIx classes
pulled changes from wtsi/devel
code and tests fixes