Print command and stdout/err on error

The stdout and stderr (which are merged) are now read
from the created Process instance if the return code
is not 0.
Use full omero.version rather than omero.shortversion for the API doc

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
merge dev_5_0 -D org: PR 2563 (Update dev_5_0 submodules)
merge dev_5_0 -D org: PR 2595 (12311 auto memory)
merge dev_5_0 -D org: PR 2596 (Groups users menu 12082)
merge dev_5_0 -D org: PR 2597 (Preview resize 12319)
merge dev_5_0 -D org: PR 2615 (Sphinx api improvements)
merge dev_5_0 -D org: PR 2622 (Fix Share service (see #11537).)
merge dev_5_0 -D org: PR 2629 (fix #11096: import directory uniqueness exception handling)
merge dev_5_0 -D org: PR 2634 (ROI improvements (rebased onto dev_5_0))
merge dev_5_0 -D org: PR 2639 (Event log queue)
merge dev_5_0 -D org: PR 2640 (Bugfix: Remove FileAnnotations when multiple images are selected (rebased onto dev_5_0))
merge dev_5_0 -D org: PR 2641 (Tagging dialog null description fix (dev_5_0))
merge dev_5_0 -D org: PR 2643 (permissions test matlab script)
merge dev_5_0 -D org: PR 2645 (Fix TableBuilder for non ASCII characters)
merge dev_5_0 -D org: PR 2648 (In place fixes)
merge dev_5_0 -D org: PR 2650 (Roi results)
merge dev_5_0 -D org

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 2607 will-moore 'Search web ui' (label: exclude)
  # PR 2591 sbesson 'Append linux to the Linux OMERO clients' (label: exclude)
  # PR 2242 joshmoore 'Use mklink under Windows' (label: exclude)
  # PR 2228 jburel 'Connection scifio' (label: exclude)
  # PR 2108 rleigh-dundee 'release-src includes bioformats version metadata' (label: exclude)
Already up-to-date.

Merged PRs:
  # PR 2563 snoopycrimecop 'Update dev_5_0 submodules'
  # PR 2595 joshmoore '12311 auto memory'
  # PR 2596 will-moore 'Groups users menu 12082'
  # PR 2597 will-moore 'Preview resize 12319'
  # PR 2615 sbesson 'Sphinx api improvements'
  # PR 2622 bpindelski 'Fix Share service (see #11537).'
  # PR 2629 mtbc 'fix #11096: import directory uniqueness exception handling'
  # PR 2634 dominikl 'ROI improvements (rebased onto dev_5_0)'
  # PR 2639 joshmoore 'Event log queue'
  # PR 2640 dominikl 'Bugfix: Remove FileAnnotations when multiple images are selected (rebased onto dev_5_0)'
  # PR 2641 knabar 'Tagging dialog null description fix (dev_5_0)'
  # PR 2643 bramalingam 'permissions test matlab script'
  # PR 2645 sbesson 'Fix TableBuilder for non ASCII characters'
  # PR 2648 joshmoore 'In place fixes'
  # PR 2650 jburel 'Roi results'

Repository: openmicroscopy/bioformats
Updating 623cd6d..c4d6ab4
Merged PRs (fast-forward):
  # PR 1160 joshmoore 'Make private class in DV reader public (see #12358) (rebased onto dev_5_0)'
  # PR 1139 imunro 'Fix for BH .Sdt meas mode 0 & 1 single pixel files & (unrelated) problem with dividing by increment count.'
  # PR 1150 melissalinkert 'Allow dist-matlab to run on Windows (rebased onto dev_5_0)'
  # PR 1157 hflynn 'Removing dead link from Minolta-MRW format page'
  # PR 1144 hflynn 'Updating Zeiss links'
  # PR 1151 hflynn 'Comstat2 link'
  # PR 1134 sbesson 'Add prefix to zip file produced by dist-bftools target'
  # PR 1140 hflynn 'Add 'show and edit on Github' to docs side menu'
  # PR 1143 joshmoore 'Memoizer errs'

Merged PRs:
  # PR 1146 sbesson 'bfsave: metadata improvements'
  # PR 1153 melissalinkert 'CZI: prevent AIOOB exception when populating position metadata'
  # PR 1159 melissalinkert 'First round of Nikon ND2 fixes'

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Excluded PRs:
  # PR 819 joshmoore '12311 auto memory docs' (label: exclude)
Updating c858dcf..3846667
Merged PRs (fast-forward):
  # PR 821 hflynn 'Schema links'
  # PR 818 bpindelski 'Add LDAP error message explanation. (rebased onto dev_5_0)'
  # PR 813 ximenesuk 'Update DropBox documentation'
  # PR 811 will-moore 'Webgateway mip 5150'
  # PR 815 manics 'Remove mapannotations'
  # PR 804 hflynn 'Adding example server setup page '
  # PR 808 sbesson 'Travis fix'

Merged PRs:
  # PR 820 hflynn 'OMERO Developer doc tidying'
  # PR 826 sbesson 'Search page tidying up'

Generated by OMERO-5.0-merge-push#43 (http://ci.openmicroscopy.org/job/OMERO-5.0-merge-push/43/)