stash... need to swap dirs
several fixes

1) to allow left-hand v deletions and right-hand j ones
2) to be kinda of tolerant of j matches ending before the end of the
query sequence (will still crash it in places)
3) finish adding hamming-to-naive plots
arg subtree broke the readme
Outstream for path names and hample output file.
Merge commit '365ec7d237d08bd4042e56e09d5aa87804208634'

Conflicts:
	ham/readme.md
Merge commit 'a1ff0f9ea212e601e0e8d2552bcea719579f3093' into dev
clean up .gitignore
test new subtree organization
test again
and again
ZOMG IT WQORKS!!!

git subtree split --rejoin --prefix=<prefix> <commit...>

the --rejoin option cleanses your subtree's history of crap you don't
need.

Of course, it'd would've been *easier* to just remember --squash when I
first 'subtree add'ed them. *sigh*
double check
sweet still good
add check for empty arg header in ham.cc
remove <label> tag from code and yamels

but add the option to print only the first character of each state's name
remove unused headers
	new file:   shippable.yml