Forcing installation of Catalyst::Action::REST module to version 1.11,
as version 1.12 made some de/serializers optional for security reasons.
This prevents the working of end points specified with no content type.
Merge branch 'hotfix/bed_feature_coords'

Fixing issues [ENSCORESW-847] and [ENSCORESW-848].
ignore the GLOB files generated
[ENSCORESW-851]. Fixing lookup code where we did not lc correctly.

The code was assuming that object types are always said with a
leading captial letter. That's not the case when object types are
user submitted
changelog updated for release 75
Version bump to 1.6.0
Funcgen dir has changed
ensembl-functgenomics is now ensembl-funcgen
CDS phase calculated based on exon phase, not set to 0
removed rank attribute
ENSCORESW-881: added source column for CDS and exons
source is inherited from parent transcript
Making a Markdown upto date version of the installation guide for REST
fixed typo on retreive
for boolean, default is 0, not null
ENSCORESW-766: if bands=1 option specified, can display karyotype info
available on whole assembly info as well as for a single region
does not display empty karyotype_band array
ENSCORESW-768: if no masking has been required, soft mask introns on genomic sequences, UTR on cds
Switched to consistently lower case ID string.
Code to fetch consequences for Structural Variants

This code will step in if the user enters alleles
that look like an SV e.g. DUP, DEL. It creates
StructuralVariationFeature objects in place of
VariationFeature objects, and tests various getter
methods using $obj->can before using them to avoid
e.g. trying to fetch sequence for an SV consequence.
fixes for hgvs and _add_fields method
only get alternate alleles
fixes for motif feature consequences