Merge pull request #267 from jaredbischof/master

Checking ASCII values of quality scores to be within ASCII range 33-126.
make fastq parsing faster
make fastq parsing faster
Merge pull request #268 from teharrison/master

make fastq parsing faster
Merge pull request #269 from jaredbischof/master

Quality values should only be checked if sequence file is fastq format.
Merge pull request #270 from jaredbischof/master

Adding pw to analysisDB and solr bug fix.
clean characters in project_name and metagenome_name
Merge pull request #271 from teharrison/master

clean characters in project_name and metagenome_name
fix file handle bug
Merge pull request #273 from teharrison/master

fix file handle bug
Merge pull request #283 from jaredbischof/master

Added SSL code for talking to mySQL database.
fix parsing of metagenome name
Merge pull request #291 from teharrison/master

fix parsing of metagenome name
Stopping script from piping stdout and stderr to a file because we want that to be returned to the AWE server for debugging puposes.