DBObjectToVariantStatsConverter tested
Initial version of converters between DBObject and Java classes
Conversion between DBObject and Variant objects improved
HBase classes moved from package monbase to hbase
Skeleton from converters to/from HBase to/from Java classes
New methods to populate the list of samples in each file
New query for the list of samples in a file, needed because the 'variants' collection only contains their genotypes
Fixed bug that prevented the metadata.header field to be written into Mongo
Inclusion options properly managed in the new VariantMongoWriter flow
Comments from the old VariantMongoWriter flow (without converters) deleted
VariantDBWriter interface simplified: the method writeStatsBatch is obsolete when using an ArchivedVariantFileConverter + VariantStatsConverter
Useless import removed
Conversion from VariantStats to Protocol Buffers implemented
First version of all Java classes to HBase converters
Conversion from VariantSource to Put
Removed repetition of ArchivedVariantFile objects serialization
HBase libraries updated to version 0.98
Tested conversion between VariantStats and DBObject (Mongo) and VariantStatsProto (HBase)
Mongo field names shortened in converters
Shortened fields in Mongo used from Writer and DBAdaptor