Limiting tests to opt and oprof (closes #2653)
Deleting trailing whitespace missed by incomplete hook - #2460
Merge pull request #2660 from permcody/delete_whitespace

Deleting trailing whitespace missed by incomplete hook
Merge commit '00ebbe18ca459ad930f9d433473844695ff1c2d0'
Making sure solution vectors are in sync in AuxiliarySystem (closes #2659).

This patch moves the calls solution().close() and _sys.update() right
after the element and nodal loop.  It also adds the same calls inbetween
volumetric and boundary loops, which caused these two vectors to be out
of sync resulting in incorrect values used in auxiliary boundary
conditions.
Merge pull request #2658 from andrsd/sync-solution-vectors

Making sure solution vectors are in sync in AuxiliarySystem.
Merge commit 'd89985d162af15ab56927a3fd688458fd28b1089'
Repaired logic bug, added test for this bug, resolved ordering in OutputWarehouse (closes #2661)
Merge pull request #2663 from aeslaughter/recover-2661

Repaired [Outputs] related logic bugs
Merge commit 'e32d29b962994e0c98c57e272f17f7d3818332ab'
Merge pull request #2654 from aeslaughter/dbg-par-2653

Limits tests to opt and oprof
Merge commit '64529dc50958e36b3b7e43a9e6c1d4fffa75e558'
Removed PETSc types (closes #2665)
Merge pull request #2666 from aeslaughter/petsc-2665

Removed PETSc types
Merge commit 'f9d4ade7df0719315765a9d3a93b7481675828f8'
Move from gap to paired in name #2667
improve the getFE interface in Assembly #2668
enhance isNodal to allow more types of elemental variables #2668
Added guard for PETSc related calls
Dummy #000