avoid thread data races
rename temp file objects
use linux specific output stream in parallel sorting when compiling for linux
add program keeping the front and back of a read for checking contig spanning by mapping
make number of input process buffers an option in bamparsort
bump libmaus version
add tool for extracting soft clipped read regions
remove SQ lines from file we merge into in bam12auxmerge
bump version after improving header merging in bam12auxmerge
- add configure checks fro Xerces C XML parsing library
- add program for converting blastn xml type output to BAM
- add program for merging reference aligned contigs
bump libmaus version
bump version after adding blastn xml to bam converter
fix compilation on Darwin
bump version after fixing compilation on Darwin