failure test with lookup3
commit before switch branch
commit before merge branch
commit before merge branch
fix conflicts in bloom.c and merge  PR 80
save before switch to other branch
remove unnecessary print
set contam and clean point to the correct position after processing each chunk
Merge pull request #82 from tzcoolman/master

set contam clean pointers in simple_check_1_ge.c to the correct position after processing each chunk, simplify scoring system
Rename files to more intuitive ones, easing newcomers adoption (like @inodb)
Merge pull request #83 from brainstorm/master

Rename files to more intuitive ones, easing newcomers adoption
merge check.c into query.c & add instruction for remove.c
rm check.c check.h
remove check.h in facs.c
Merge pull request #85 from tzcoolman/master

Thanks Enze!

merge check.c into query.c & add instruction for remove.c
Added jinja2 to deconseq configuration template, thanks to @guillermo-carrasco, closes #79
Merge branch 'master' of https://github.com/SciLifeLab/facs
Merge pull request #86 from brainstorm/master

Move configuration template out of code, fixes issue #79
Counts number of chromosomes (as @guillermo-carrasco names the fasta description lines) for simNGS, fixes issue #78
Remove dummy generation of reads