Removed anyjson submodule and replaced with source
Merge pull request #167 from StochSS/master

Pull the last minute changes back into develop
Merge pull request #168 from StochSS/anyjsonincluded

Removed anyjson submodule and replaced with source
Fixed paths
Merge pull request #170 from StochSS/master

Gotta propagate the anyjson fixes down
add support in infrastructure manager for amqp broker (to replace sqs)
add key_prefix in relevant methods to allow for specifying machines by a common prefix, enforce use of amqp broker in backend and ensure that the broker is always running, add new mcem2 job type, check for cores parameter and launch one micro instance/worker per core requested and subscribe them all to the same queue, implement master task and slave task as wrappers around the master and slave routines within mcem2, the master also has an update process that updates output bucket in s3 every 30 seconds
update front end handlers slightly to accept new result type of executeTask method and to use the user_id for the key_prefix parameter where appropriate
update executeTask implementation, make check for queuehead explicit, fix bugs in new celery tasks, update worker AMIs, add poll_task subprocess behavior
Some intial efforts to make the stochoptim GUI
Added fileserver functionality
Things seem to be working except for writing the StochSS models to stochoptim format (.R).

Also there is no installer.
Stochoptim is working if paths are hardcoded in
Merge branch 'new-r-job' into stochoptimserial