BlastDB.pm

CreateBlastDB.pm

PrepareSequence.pm

BlastpWithFasta.pm

HmmProfileFactory.pm

HmmBuild.pm

HmmCalibrateFactory.pm

HmmCalibrate.pm

PeptideAlignFeatureAdaptor.pm

MSA.pm

HclusterParseOutput.pm

Runnable.pm

Blast.pm

BlastDB.pm

Blast.pm

Runnable.pm
Merge commit to bring recent developments in
ran success ensembl-71
Merge commit to bring recent developments in
Latest RunnableDB ran to generate Metazoa v73 HMM profiles

Remove 'modules' directory

Modules for ComparaHMM pipeline

Modules for ComparaHMM pipeline

Added new directory for "BuildHMMProfiles" and "ComparaHMM" pipeline

Removed this directory since is replicated in "lib"

Removed this directory since is replicated in "lib"
Merge commit to bring recent developments in
update package definition

update package definition;code cleaning up

update package definition;code cleaning up

update package definition;code cleaning up

update package definition;code cleaning up

update package definition;code cleaning up

update package definition;code cleaning up

update package definition;code cleaning up

update package definition;code cleaning up

newly added to point to the MSA.pm specific for building profiles

update package definition;code cleaning up

update package definition;code cleaning up

new runnable that create fasta file of non-classify proteins

add runnable

update package definition;code cleaning up

new module that creates 2nd level HMMClassify jobs

update package definition;code cleaning up

update package definition;code cleaning up

add runnable

add runnable

add runnable

new config with 2-level HMMClassify
full integrated and test builhmmprofiles pipeline into peptide compara
remove primary key creation for sequence_unclassify tbl
Merge commit to bring recent developments in
Update of the pipeline structure for e75
Moved the modules from lib/Bio/EnsEMBL/Hive/ to modules/Bio/EnsEMBL/Compara/
No references to the mailing-lists
removed the CVS variables
License update

Correct Apache 2.0 license header
Some more licensing issues
Registry PantherAnnot adaptor
add line to store hmmclassify results into hmm_annot table
Update lines to use PantherAnnot object to get interpro annotation
Add function to get hmmclassify results from schema