WINDUP-345: Make the commitPeriodically from IndexClassFilesRuleProvider a normal operation
WINDUP-356: Javadoc polishing - remove Frames packages, add some package-level javadoc with links to GitHub
WINDUP-338: org.jboss.windup.rules.apps.xml.legacy.EjbConfig uses and  which limits the operations too much
WINDUP-369: Be able to focus effort on specific jars in the ear or war