initial branch creation
Reads and Readset modifications -- breaks webservice, to fix
ReadSet class changes for WebService
Readset Test updates
Unit test fixes
Merge branch 'feature/webservice_tests' into feature/webservice_fixes

Conflicts:
	seqware-queryengine-webservice/src/test/java/com/github/seqware/queryengine/system/rest/resources/ReadSetResourceTest.java
	seqware-queryengine-webservice/src/test/java/com/github/seqware/queryengine/system/rest/resources/ReferenceResourceTest.java
Manual merge fixes
Merge branch 'feature/webservice_tests' into feature/webservice_fixes

Conflicts:
	seqware-queryengine-webservice/src/test/java/com/github/seqware/queryengine/system/rest/resources/ReferenceResourceTest.java
Merge branch 'feature/MRPluginLayerTest_Stable' into feature/webservice_fixes
Merge remote-tracking branch 'origin/feature/webservice_fixes' into feature/webservice_fixes
ReadSetResourceTest typo fix
Added support for WebService Plugin GET
Initial work on running plugins
Plugin Running functionality
Merge branch 'feature/disable_hbase_maven_plugin' into feature/webservice_fixes

Conflicts:
	seqware-queryengine-webservice/pom.xml
Merge branch 'feature/MRPluginLayerTest_Stable' into feature/webservice_fixes
Merge remote-tracking branch 'origin/feature/webservice_fixes' into feature/webservice_fixes
Plugin now deletes temporary file
Updated Unit tests
Added file uploading for features