Small change to usage info
Changes to HaplotypeCaller scripts to fix into pipeline. Now fully operational.
Small change to usage info
Changes to the annotation script to incorportate the phred-scaled CADD scores. This includes adjustments to the annovar perl script and changes to the ExmVC.3 script. See detailed notes in ExmVC.3.AnnotatewithANNOVAR.sh and the perl script to see the changes. Basically, the perl script only adds the first column of data from the cadd database file, I added lines to the perl script to grab the second column too, and altered the pipeline script to accomodate this.
Added new capture kit
Added new capture kit