AmpliconCoverageFilter complete.
AmpliconCoverageFilter complete, Other changes, playing around with branches.
Merge branch 'master' of https://github.com/ARUP-NGS/Pipeline into DanielBranch
Merge branch 'master' of https://github.com/ARUP-NGS/Pipeline into DanielBranch
Rewritten BAM record counter, moved a method from OncologyUtils to Operator.