Merge pull request #1 from camillescott/master

Howto for biopython parsing, mutation positions
Merge pull request #2 from camillescott/master

more correcty mutation selection
add basetoint, inttobase, seqtoint, inttoseq and base counts for refgen
Merge branch 'master' of https://github.com/rohanmaddamsetti/parallyze
README updated on one computer, parallyze.py on another
added seqtoint, inttoseq, inttobase, basetoint, and base counts
delete unneeded comments
change print seq method
create file for proc1 psuedocode, changes to parallyze?
add to make more complete
minor changes, plus screwing up config files
unbreak links to kingshorses for config files
made condensed files for test, begun dicts(muts)
genomediff parsing into list of dicts efforts
maybe dealt with TypeError in conf[diffs] parsing
fix = vs. == in proc1
Merge pull request #2 from rohanmaddamsetti/master

update mater