Updated reference to velver version.
Changed Picard installation directory
Changed PeakAnalyzer installation directory.
Updated QC commands and images to the fastqc version 0.11
Adding instruction to go to PeakAnalyzer tool directory
first before executing the jar file, since it's dependent
on the "Data" directory.
edited one firefox command
changed related to cuffdiff2 were added/edited
Merge branch 'rejig' of https://github.com/BPA-CSIRO-Workshops/ngs-handout into rejig
Fixing a minor typo ('{' - mismatch).
misc changes
misc changes
Merge branch 'rejig' of https://github.com/BPA-CSIRO-Workshops/ngs-handout into rejig
Applying minor changes to chop-seq, de_novo,
from Sean L.
Merge pull request #1 from BPA-CSIRO-Workshops/rejig

Rejig