Calculate SNP quality during alignment phase. Working is in progress...
- Change SNP_Prof data structure, update SNP quality during alignment phase
- Modify functions for SNP quality calculation to adapt to new SNP_Prof data structure, new strategy of calculating SNP quality
- Add Indel quality calculation.
- Eliminate functions for SNP caling phase which calculates SNP quality after alignment phase.
Add snp quality testing module, modify other testing modules
...
Use buffered channel for SNP_results
Use unbuffered channel for snp_results chan, change log info, change names of function WriteSNPCalls() to OutputSNPCalls()
Merge branch '0.3.6-snpqual-inalignment'
Update CHANGELOG