added excludes for the gh-pages branch
fixed example
C++ style comments
config.h/autoconf
removed section on compiling examples, as that is now covered above
added @brief
deleted
cleanup + enable config.h
updated dox
new include
reran automake
removed last ref to Nucleotides enum type
replaced enum with enum class
replaced enums with enum classes.  Removed enum types that led to weirdness is the divergence code base
move from enums to emum classes
formatting
first test added
new test file
added tests for each codon under universal genetic code
cleanup