Fixing Job.getInstance call that breaks hadoop 1 compatibility.
add repartition parameter
Update the SCM info for Jenkins release plugin
[maven-release-plugin] prepare release adam-parent-0.7.2
[maven-release-plugin] prepare for next development iteration
Add docs and scripts for creating a release
Issue #137, clarify role of CHANGES.{md,txt}
Merge pull request #193 from hammerlab/changes-unification

Issue #137, clarify role of CHANGES.{md,txt}
Merge pull request #192 from massie/release

Add docs and scripts for creating a release
Merge pull request #183 from fnothaft/variation-context-fix-hadoop-job

Fixing Job.getInstance call that breaks hadoop 1 compatibility.
Merge pull request #191 from hammerlab/repartition

Add repartition parameter
Updating pileup conversion code to convert sequences that use the X and = (EQ) CIGAR operators.
Merge pull request #199 from fnothaft/pileup-xeq

Updating pileup conversion code to convert sequences that use the X and = (EQ) CIGAR operators
Identifier consistency & formatting cleanup Issue #126

The commits fix issue #162.

Adam --> ADAM for all file contents and file names.
All scala code reformatted with https://github.com/mdr/scalariform/wiki/Command-line-tool
Move package from edu.berkeley.cs.amplab to org.bdgenomics
Merge pull request #203 from massie/package-move

Move package from edu.berkeley.cs.amplab to org.bdgenomics
[maven-release-plugin] prepare release adam-parent-0.8.0
[maven-release-plugin] prepare for next development iteration
[maven-release-plugin] prepare release adam-parent-0.8.0
[maven-release-plugin] rollback the release of adam-parent-0.8.0