merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 3086 will-moore 'Create image by tiling 12459' (user: will-moore)
  # PR 3173 dominikl 'Bugfix: Help menu not working' (user: dominikl)
  # PR 3000 jballanc 'Update artifacts for Lucene, Hibernate, and Spring' (user: jballanc)
  # PR 3148 jburel 'Rnd rgb' (user: jburel)
  # PR 3176 dominikl 'Edit DoubleAnnotations' (user: dominikl)
  # PR 3042 will-moore 'Download dataset project' (user: will-moore)
  # PR 3163 bpindelski 'Add chgrp/delete Python tests (assist #12452 and #12544).' (user: bpindelski)
  # PR 3115 sbesson 'CLI admin diagnostics: only check readability of var folder' (user: sbesson)
  # PR 3160 ximenesuk 'Try search repeatedly until success' (user: ximenesuk)
  # PR 3174 dominikl 'Distorted 'Send feedback' dialog' (user: dominikl)
  # PR 3175 will-moore 'General pane web' (user: will-moore)
  # PR 3127 will-moore 'Batch Annotate with Read-only' (user: will-moore)
  # PR 3037 joshmoore 'Group sudo' (user: joshmoore)
  # PR 3133 dominikl 'General Pane alignment' (user: dominikl)
  # PR 3139 will-moore 'Plane info units' (user: will-moore)
  # PR 3157 jburel 'Reset password' (user: jburel)
  # PR 2363 dominikl 'Java Gateway API' (label: exclude)
  # PR 3167 snoopycrimecop 'Update develop submodules' (user: snoopycrimecop)
  # PR 3109 dpwrussell 'Disable keyboard navigation (up, down, left, right) for jquery tabs' (user: dpwrussell)
  # PR 3142 jburel 'Deprecate  methods/services' (user: jburel)
  # PR 3178 will-moore 'Robot webadmin.txt Log Out' (user: will-moore)
  # PR 3155 jburel 'Re changes' (user: jburel)
  # PR 3058 sbesson 'Homebrew nginx (rebased onto develop)' (user: sbesson)
  # PR 2182 joshmoore 'Read only flag' (user: joshmoore)
  # PR 3069 aleksandra-tarkowska 'Scalebar' (user: aleksandra-tarkowska)
  # PR 3156 aleksandra-tarkowska 'Templates cleanup' (user: aleksandra-tarkowska)
  # PR 3098 aleksandra-tarkowska 'Metadata reimport' (user: aleksandra-tarkowska)
  # PR 2585 aleksandra-tarkowska 'making time_zone and first_day_of_week configurable' (exclude comment)
Already up-to-date.

Conflicting PRs (not included):
  # PR 3141 dpwrussell 'jstree upgrade (Functionality Review Only)'
  # PR 3146 joshmoore 'Add Length unit & update code'

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes' (user: melissalinkert)
  # PR 1411 melissalinkert 'Metamorph: fix double value parsing for locales that use a comma separator' (user: melissalinkert)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1404 melissalinkert 'Re-enable URLHandleTest' (user: melissalinkert)
  # PR 1365 ctrueden 'PrairieView 5.2 fixes and improvements' (user: ctrueden)
  # PR 1366 ctrueden 'Miscellaneous cleanup' (user: ctrueden)
  # PR 1383 LeeKamentsky 'Fix im3 metadata' (user: LeeKamentsky)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 1412 melissalinkert 'Zeiss CZI: prepend 0s so that image names are all the same length' (user: melissalinkert)
  # PR 1395 rleigh-dundee 'C++: Various minor fixes' (user: rleigh-dundee)
  # PR 1385 rleigh-dundee 'C++: Add TIFF reader' (user: rleigh-dundee)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (user: melissalinkert)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
Updating e9cb435..325da3c
Previously merged:
  # PR 1410 mtbc 'add RandomAccessOutputStream(byte[]) constructor'
  # PR 1409 hflynn 'Removing jpeg 2000 broken link (rebased onto develop)'
  # PR 1403 hflynn 'Removing dead visiquest link'
  # PR 1387 sbesson 'Fix testng JAR for Bio-Formats tools components'
  # PR 1384 melissalinkert 'OME-TIFF: return blank planes if the corresponding file does not exist'
  # PR 1386 melissalinkert 'Zeiss CZI: fix dimension calculations when expected planes are missing'
  # PR 1397 hflynn 'replacing boostpro link'

Merged PRs:
  # PR 1362 melissalinkert 'Make FormatReader's RandomAccessInputStream transient'
  # PR 1396 qidane 'Units introduction for remaining quantities'

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Excluded PRs:
  # PR 990 kennethgillen 'for users who have compiled isapi_wsgi on x64' (user: kennethgillen)
Updating d7681c9..9353dcf
Previously merged:
  # PR 1014 bpindelski 'Ldap.txt: cleanup and update column names.'
  # PR 1022 hflynn 'In-place import user & group set-up plus minor tidy'
  # PR 1021 sbesson 'Review documentation for release infrastructure'
  # PR 1024 hflynn 'Variable names in example are swapped (rebased onto develop)'

Generated by OME-5.1-breaking-push#169 (http://ci.openmicroscopy.org/job/OME-5.1-breaking-push/169/)