Adding new global config xml schema
Switching to lower case
FileAndResourceConfig added

This trait will read configurations from the command line or from a global config xml. (This is aiming at replacing the globalConfig.sh, though it's not quite there yet).

Also created a new package called molmed.config to which config classes/traits/etc should be moved.
Creating new mini classes to add NameAndPath
Better instructions in the setup...

... on how to add Piper to the path.
Woops! Forgot to remove #
Boosting compression level and using threading...

... when joining bams
Uppmax xml config file
Correct drmaa lib location on uppmax
Bumping version to v1.2.0-beta2