Updates for handling references with transcriptome version
modified so that a default transcriptome should not be used
Now using non-capturing group (?:) to simplying changes in reference::find . Extended reference-find test with transcriptome ref genome parsing
Merge branch 'devel' of https://github.com/wtsi-npg/npg_tracking into transcriptome
Changes file updated
Merge pull request #160 from mgcam/devel

samplesheet regenerated when the existing file does not come from the currently pending run
Fix repository for transcriptome parse check
Merge pull request #2 from dkj/devel

Fix repository for transcriptome parse check
ensure genome reference retrival works when transcriptome given
Merge pull request #3 from dkj/devel

ensure genome reference retrival works when transcriptome given
Merge pull request #161 from jidur/transcriptome

Transcriptome: Changes for not using a default transcriptome
pass Illumina samplesheet study name field components through a filter to replace commas