Merge pull request #1107 from melissalinkert/rebased/develop/test-runner-classpath

Exclude log4j and packages from target-test-runner (rebased onto develop)
Merge pull request #1099 from melissalinkert/rebased/develop/disable-group-files

Disable file grouping in ImageJ remote import plugin (rebased onto develop)
Update auto-generated documentation

Repository: openmicroscopy/bioformats
Already up-to-date.

Generated by BIOFORMATS-5.1-latest-docs-autogen#64 (http://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest-docs-autogen/64/)
merge develop -D org: PR 857 (Initial support for Zeiss .lms files)
merge develop -D org: PR 858 (Initial support for Veeco AFM data)
merge develop -D org: PR 981 (Ignore namespaces when filling in an XMLAnnotation's Value)
merge develop -D org: PR 983 (Woolz: make sure the service is initialized when calling openBytes (rebased onto develop))
merge develop -D org: PR 1028 (Large fileset performance improvements (rebased onto develop))
merge develop -D org: PR 1049 (DICOM: fix file grouping so that path names are normalized (rebased onto develop))
merge develop -D org: PR 1060 (Allow dist-matlab to run on Windows)
merge develop -D org: PR 1070 (DICOM: expand sequence reading to include known sequences (rebased onto develop))
merge develop -D org: PR 1082 (C++: Add support for integers of different endianness)
merge develop -D org: PR 1092 (Allow for a >1 count increment in B&H .sdt Files. (rebased onto develop))
merge develop -D org: PR 1096 (Fix 5D Imspector support (rebased onto develop))
merge develop -D org: PR 1097 (CellSens: fix off-by-ones in subresolution tile calculations (rebased onto develop))
merge develop -D org: PR 1098 (Gatan metadata fixes (rebased onto develop))
merge develop -D org: PR 1100 (Fix single plane ND2 line scan (rebased onto develop))
merge develop -D org: PR 1101 (QuickTime: fix header/footer parsing bug (rebased onto develop))
merge develop -D org: PR 1102 (Metamorph .nd performance improvements (rebased onto develop))
merge develop -D org: PR 1103 (Flex: fix support for new file naming scheme (rebased onto develop))