Fixes #1546
Fixes #1547.
Remove cogent.parse.blast.BlastResult in favor of teh brokit
Replace MinimialBlatParser9 import with teh brokit
Merge branch 'master' into no-cog-yay
use brokit's denoiser
Remove teh tax2tree from assign_braxonomy.py
fix brokit license

thanks @ElDeveloper
cleaned up missing imports
cleaned up imports
removed unused function
modified imports
Merge pull request #1553 from ElBrogrammer/no-cog-yay

No cog yay
updated to use the new Alignment object - note that the tests did not change, so this is good confirmation that we're achieving the same functionality
removed function that is now no longer used. go scikit-bio
removed cogent dependencies from remove_outliers - note that no changes to the test data were made, only had to modify to use the skbio Alignment interface
decogented... fixes #1500
fixed typo
fixed doc error
doc fix