More transparent listing of dependencies in README
Removed argparse as dependency (included in 2.7.* python), added more python dependencies in setup.py
Install dependencies with conda in travis
Typo in miniconda path, thanks @binnisb
Trying travis without some low level packages, should be dealt with by anaconda
Added cython to dependencies
Added optional dependencies to readme
Merge pull request #56 from binnisb/docker

Added the Dockerfile
Merge branch 'develop' into clarify_dependencies
Updated installation procedure in README
Removed installation via pip and installation using apt-get
Changed PROKKA_COG.py to use argparse and biopython
Added cython to setup.py
Merge pull request #57 from alneberg/PROKKA_COG

Changed PROKKA_COG.py to use argparse and biopython
Added R packages to optional dependencies in readme
Formatting fix in readme
Further formatting issues
Does not describe how to install optional dependencies
Merge pull request #55 from alneberg/clarify_dependencies

Clarify dependencies
Docker file for full dependencies of CONCOCT and pre and post processing of input and results. Found in docker index as binnisb/concoct_0.2.1_full