saxon bug
	modified:   Dockerfile
Not all dependencies were resolved for saxon in the new ubuntu base 14.04. Luckily solved by now full installing the java-jre and all of its dependencies (dpkg workaround no longer needed)
	modified:   src/MyFLsite/startApp.sh
supervisord warning addressed by providing a hardlinked configuration file
	modified:   src/testoutput.xml
full test file
supervisord hardlinked config
	modified:   src/basespace/myflq_wrapper.sh