1.63 beta version bump
Adapting NEWS file for the beta relase
Post Biopython 1.63b version bump
Tweak for test_SearchIO_fasta_m10_index.py with DOS/Windows newlines
Updating the URL of NumPy
Should have fixed too this two commits ago...
Fix bug in fasta-m10 consensus sequence parsing & add its tests
DSSP: Fix ValueError: too many values to unpack in __main__

Commit 3e287df caused a minor issue since __iter__ and keys methods of DSSP class return different tuples. DSSP objects cannot be indexed by tuples returned by __iter__. 

Either [d[x][1] for x in d.keys()] or [x[1] for x in d] must be used to get the secondary structure.
Now tested under PyPy 2.2 as well
Bio/PDB/NACCESS: Various NACCESS fixes and unit tests

- os.system(cp/rm) calls converted to correspoding shutils calls.
- os.popen3 and mktemp calls are replaced with subprocess and mkstemp.
- pdb file path is converted to absolute path.
- rsa and asa files added to Tests/PDB directory.
- NACCESS unit tests added.
- NACCESS.py pep8-ified.
Thank Gokcen Eraslan in NEWS and CONTRIB (PDB related work)
Slightly clearer exception for debugging.

This is known to fail on (very old) EMBOSS 2.10.0 output, see:
http://www.biostars.org/p/87226/
Reduce text on NCBI legacy BLAST in Tutorial
1.63 version bump
NEWS update for 1.63
removed (temporarly) the tests for field ti on TogoWS
Python 3 fix for Bio.Restriction update script.

Nowhere else in Biopython uses FancyURLopener so it isn't
currently defined in Bio._py3k (but could be added there).
Update Bio.Restriction update for removal of its DNAUtils module

This also appears to fix a bug in detection of palindromic
sequences (old code wrongly was using object comparison),
which appears to have led to overly verbose regex patterns.
Fix dict whitespace when regenerate Bio/Restriction/Restriction_Dictionary.py

(The previously generated file was edited with a PEP8 tool)
REBASE now uses period (dot) and hypens in Enzyme names. Nasty.