Merge branch 'F-zsync' of git://arthur.barton.de/homebrew-alex
Add hdf5 and its dep, szip.
Merge branch 'master' of github.com:mxcl/homebrew
Minor fix: disappeared URL updated to new location

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Updated netcdf to version 4.1.1

- NetCDF brew updated to version 4.1.1.

- Now builds against HDF5 for interoperability.

- ENV.m32 removed and builds x86_64 native on Snow Leopard
  (tested on 10.6.3)
Updated NetCDF to build shared libs

By default, NetCDF only builds static libs.  This leads to some
complicated dependencies that must be satisfied by other programs that
link against libnetcdf.a:

    nc-config --libs
    -L/<brew root>/Cellar/netcdf/4.1.1/lib -lnetcdf
    -L/<brew root>/Cellar/hdf5/1/lib -lhdf5_hl -lhdf5 -lz -lm -lcurl

HDF5 is required to access version 4 of the NetCDF file format.

When shared libraries are provided, the linking requirements are
greatly simplified:

    nc-config --libs
    -L/<brew root>/Cellar/netcdf/4.1.1/lib -lnetcdf

This eases the build process for other formulas that depend on NetCDF
libraries.

The static libraries are still compiled and available for use.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Fix version information in hdf5 formula

Signed-off-by: Michael Wild <themiwi@users.sourceforge.net>
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Removed Fortran from NetCDF build

Fortran support has been explicitly disabled in the NetCDF brew pending
the resolution of Issue 72. It is perfectly possible to use the brew to
build a working Fortran NetCDF library if a Fortran compiler is present.
However, configure may fail on 64 bit architectures as Homebrew does not
set the FCFLAGS and FFLAGS environment variables to be compatiable with
those set for CFLAGS.

The best resolution of this issue is formal support for a Fortran
compiler.

A non-existant configure argument related to Szip was removed. This
dependency is satisfied by specifying the location of HDF5.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Hdf5 1.8.5
Formula for the R programming language

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Update r to homebrew style
R - add gfortran notes to caveats
Update formulae for version 0.7

* Use new "url" features
* Use keg_only DSL
* Use "skip_clean :all" DSL
* Whitespace and style cleanups
* Make bash invocations less silly
* Use new man2-man8 helpers
* Remove "FileUtils." since it is included in Formula
* Use real names for deps instead of aliases
* ENV.x11 now updates path, so remove that from individual brews
netcdf - enable fortran support
Update R to 2.11.1

Updated R to patchlevel 1.

This will be the last release of R before 2.12.0 goes stable in October.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
R now compiles as a framework.

Signed-off-by: David Höppner <0xffea@gmail.com>

* did remove --with-blas=-framework vecLib (linker errors)
Updated HDF5 to patchlevel 1

New official release.  Old download link was broken.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
New formula: minc

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Updated R to 2.12.0

This release has many new features as well as bug fixes.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Bumped R version to 2.12.1

Also removed the caveat explaining to the user that gfortran is required for
installation as this exact same information is displayed if `which gfortran`
returns empty-handed and is irrelevant if the install succeeded.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>