Biocore updates

As far as I'm aware this pull request will resolve all of the following points that were listed in #7:

- Fix all links to point to GitHub.
- Remove any mention of Java.
- Fix README.md: clean it up to look more standard github.
- Add Licenses.

------

The remaining things are to:

- Remove warnings about using an older version of Firefox. (Couldn't find any mention to this).
- Beer? (I would much rather prefer if we could have said beer during stout month at the Southern Sun).