General update of various files
-When reflection model took control of and deleted the reverberation model
the test in reflect_loss_test/reflect_flat_test was not updated. Changed
test to now use updated control flow.
-When run_id was added to wave_queues, the proploss_basic test was not
updated to allow for proper functionality. Changed call to wave_queue
to now appropriately call CLASSIC_RAY.
-More comments on eigenverb_model
-Added new functionals to ublas_special
Merge branch 'development0.05' of https://github.com/campreilly/UnderSeaModelingLibrary into development0.05