Updated pastix to 5.2.2

Closes #532.
root: remove bottle code

Fixes #535.
Add a formula for installing UTGB Toolkit

Closes #526.
Update Mathomatic URL and add devel link.

Fixes #290.
Update sllib to 1.4.2f.
Upgrade wcslib to 4.19.
libgtextutils: Now a subformula of fastx_toolkit

Remove libgtextutils and make it a subformula of fastx_toolkit.
fastx_toolkit is the only formula that requires libgtextutils.
fastx_toolkit: Fails with clang

Closes #432
Simplify MPI dependency in lammps.
amos: Fails with clang

genome-complexity-fast.cc:21:54:
error: reference to 'hash' is ambiguous
note: candidate found by name lookup is 'std::__1::hash'
note: candidate found by name lookup is '__gnu_cxx::hash'

Closes #485
ucsc-genome-browser: Fix the mysql include path

Change
"MYSQLINC=#{HOMEBREW_PREFIX}/include"
to
"MYSQLINC=#{HOMEBREW_PREFIX}/include/mysql"
ucsc-genome-browser 292
fastx_toolkit: Add HEAD

Closes #536
beast 1.8.0: Fix directory reference in HEAD

Closes #538
Changed CMake options for enabling Qt support.

Closes #530.
Upate vigra to 10.0.

- Add checks at build time
- Optionally depend on hdf5 and Python.
adding enblend and enfuse 4.1.1

this formula builds both the enblend and and the enfuse tools

Closes #120.
New formula for Arpack.

Closes #188.
Closes #511.
New formula: SNID 5.0

A Supernova Identification package, originally
written by John Tonry to determine redshifts of
Type Ia supernovae. It has since been re-written
and expanded to include type and age determination,
as well as an interactive plotting package.

Closes #167.
vtk: Added new VTK_INSTALL_PYTHON_MODULE_DIR for the python wrappings (HEAD build, in prevision of future vtk 6.1)
Do not use the patch for Head, it was merged

Closes #435.