Merge remote-tracking branch 'srl-remote/devel' into devel
Merge remote-tracking branch 'srl-remote/fix_tee' into devel
Merge remote-tracking branch 'srl-remote/fix_tee' into devel
Merge branch 'devel' of github.com:wtsi-npg/npg_seq_common into devel
Merge branch 'devel' of github.com:wtsi-npg/npg_seq_common into devel
Merge branch 'devel' of github.com:wtsi-npg/npg_seq_common into devel
Merge remote-tracking branch 'jillian-remote/bwa_mem' into devel
use Biobambam bammarkduplicates2 in place of bammarkduplicates