correct bin location
missing leading / in bin path
bin was prefixed on ref area
bin was prefixed on ref area, reuse was a bad idea
fix mem
increase memory for seqware limitations
increase memory for ascat R step
test pindel
path corrections
path corrections
more memory fixes
more memory fixes
try brass steps
wrong key for genome param
brass needs paths in advance
increase mem
test caveman
correct paths
escape hell
passed string of variable name instead of the actual variable