add parameter for setting the size of the fragment/pair freelists in bammarkduplicates2
add normalisefasta program
add manual page for normalisefasta
bump libmaus version
add normalisefasta in .gitignore
add bamfilterheader program
add md5 arguments in help message for bamreset
add key for replacing the BAM header during reset
add merge script
bump version after adding key for replacing header in bamcollate2 (reset=1) and bamreset
fix help text
add exclude key in bamreset
- add option for adding FastA in bamtofastq
- bump libmaus version
bump version after adding fasta option in bamtofastq
bump libmaus version after bgzf eof updates in libmaus
improve eof checking in bamindex program
bump version after improving handling of empty bgzf blocks
remove unnecessary include statements
add interface for parallel sorting in bamsort
change default sbs buffer size in bamtofastq