moving loci overlaps function to trait
Dropped filterLociWhoseContigsHaveNoRegions
bump scalatest to version 1.0
remove Read.inferredInsertSize helper-accessor
remove unused import
Read.isPaired tweak
wrapped-arg whitespace, named params
Merge pull request #158 from hammerlab/scalatest

bump scalatest to version 1.0
Merge pull request #156 from hammerlab/move-loci-funcs

moving loci overlaps function to trait
Array[Byte] <-> String conversions for tests
fix a bunch of deprecation WARNINGs
Merge pull request #160 from hammerlab/bases

better Array[Byte] <-> String conversions
Merge pull request #161 from hammerlab/deprecations

fix a bunch of deprecation WARNINGs
Merge pull request #159 from hammerlab/style

a few style nits
Merge pull request #157 from hammerlab/distutil-update

Dropped filterLociWhoseContigsHaveNoRegions
indels squashed