Correcting thermo when more than one resonance structure is present
Flagged out the code for birad to double bond, might come in handy for some other purpose, otherwise somebody would never have put it there.
New reaction family to go from trienes to cyclohexadienes. (reverse Diels Alder)
Updated tree for int H migration. Shamel check 1045 and 1052!
If QM fails just generate fake theenthalpy of formation = 1000 kcal/mol.
We are OK with this as the species are forced in the edge.
Updated family.txt to allow Intra_Diels_alder2
Allowed reverse reaction for Intra_Diels_alder, was not defined up to now (I thought it was crashing somewhere).
Adding benzene to forbidden group list for intra_diels_alders2 reaction
family
Updating the forbidden group in Intra Diels Alder reaction

It should now not allow any of the benzene substitutents.
However I think it will still fail on other aromatics like
naphthalene and anthracene. I am not sure what would be a
general solution right now. Since it is a special family
to form aromatics in pyrolysis -- I might turn this family off
by default for now.
Changing the default setting to off for Intra_Diels_alder2
family for now.

This family causes RMG to break everytime it encounters an aromatic
ring not in its forbidden group list. I am not sure should we come with
a comprehensive forbidden group list or hard code a fix in the code?
Small modifications to JP10libraries and Intra_Disproportionation
Adding forbidden structures for Intra_Diels_alder2.
Shamel aromatics library
Updated aromatic library.
Forbidden diels alder 2
Beta scission, new ones flagged out
Still errors on naphtalene, explicit * numbering of adjacent groups to avoid Diels Alder and Diels Alder 2 to crash on aromatics.
Added two rate coefficients that might be important for benzene formation during pyrolysis.
Updating rate coefficient for H abstraction by H from alpha position of
alcohols
Update URL of iupac's inchi102b in the Makefile.

This is so that "make inchi" works.
Fixing bug of reading thermo from primamry thermo library

When the aromaticity code was changed the chem graph was copied
to a new copy called themo_graph however at that time we did not realize we
also needed to update the attribut to the chem graph like
the boolean is thermo coming from primary thermo library or not.

(Yay to weekly debugging :) )