Added pyflakes ignore to doc conf.py
Fixed doc Makefile to allow -C flag usage
Updated nbpublisher submodule reference
Updated dataviews submodule reference
Added doc/reference_data submodule
Updated builder submodule reference
Updated links to old GUI Tutorials
Updated doc/builder and nbpublisher submodule references
Switched protocol of doc/reference_data submodule
Updated Sphinx template to allow external hosting of Tutorials
Updated location of som_retinotopy.html notebook
Added input parameters to tiny.ty
Added analysis code back to model