Remove runLoadInstrumentFromNexus re #9996

and reference to LoadInstrumentFromNexus

Signed-off-by: Karl Palmen <karl.palmen@stfc.ac.uk>
Correct fix for setting CRLF as default EOL on Windows

Refs #7573
Fix doxygen warning.

Refs #9950
refs #10029. Combine operations.

The test code looked lean, I therefore profiled the test suite on RHEL6. The major issue seemed to be the number of binary operations occuring. I have reduced these through some simple rearrangement of the calculations and caching of intermediate values. On my OSX enviroment this is reporting a 50% speed up for the offending test (test_run_PA_unity) which is according to the RHEL6 builds a major bottleneck to the suite.
re #9923 updated links and qc, still needs links from algs
Delete a few pointers. Refs #10014
Solved some issues about log boundary. Refs #10028.
Fix buffer overrun in isis raw header access.

Refs #9950
A few more pointers to delete. Refs #10014
Try to fix some invalid reads. Refs #10014
Fix two usage examples on Windows.

The numpy.shape print in windows printed (0L,) and not (0,) due to the
different representations on the different platforms.

Refs #10002
Merge branch 'master' into bugfix/9968_refactor_indirect_tabs

Conflicts:
	Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/IndirectDataReductionTab.h
	Code/Mantid/MantidQt/CustomInterfaces/src/C2ETab.cpp

Refs #9968
Added some tool tips for less intuitive preferences

Refs #7573
Re #9900. CreateChunkingFromInstrumentTest
Merge remote-tracking branch 'origin/feature/9933_savegss_improve'
refs #10033. Refactor test.
Added diff method to parametermap. re #10030
Refs #10023. Tweak usage example testing
Merge remote-tracking branch 'origin/feature/9144_add_append_option_to_saveascii'
Merge remote-tracking branch 'origin/feature/10018_LoadSasena_Usage_Example'