release 1.0 - finally
First documentation of sample input.
Formatting fixes for gh rendering
First draft of complete doc for 1 example.
Some final changes on first draft of sample documentation.
Fix typo in heading
stopped this from trying to run the non-xml files
Merge branch 'gonuke-document_inputs' into develop
updated for CYCLUS_ROOT_DIR
fixed endif clause
fixed indentation
Merge pull request #279 from scopatz/cycroot

updated for CYCLUS_ROOT_DIR
Merge branch 'master' into v1.1.0-release
Merge branch 'master' into develop
updated reflist for v1.1
fix bug introduced where we subtly shifted to reloading the entire core instead of just one batch - [facepalm]
Merge branch 'fix-reload' of github.com:rwcarlsen/cycamore into rwcarlsen-fix-reload
Merge branch 'rwcarlsen-fix-reload' into develop
Merge remote-tracking branch 'up/master' into develop

in release 1.1, master was updated without flowing from develop to master. this merges those master commits back into develop.
Merge pull request #284 from gidden/dev-merge

Dev merge