Merge pull request #80 from wtsi-npg/devel

v10.13
Merge pull request #83 from wtsi-npg/devel

v10.14
Merge pull request #84 from srl147/devel

Devel
Merge pull request #85 from wtsi-npg/devel

release 1.17
Changed to use soft filtering instead of hard filtering
Merge pull request #86 from jenniferliddle/devel

Changed to use soft filtering instead of hard filtering
Merge pull request #87 from wtsi-npg/devel

Merged for release 10.16
Merge pull request #88 from srl147/devel

handle NULL states returned by getFilterData
Merge pull request #89 from wtsi-npg/devel

handle NULL states returned by getFilterData
Merge pull request #90 from srl147/devel

ignore secondary and supplimentary alignments when building filter
Merge pull request #92 from srl147/devel

ignore secondary and supplimentary alignments when building survival table