script to deploy to s3; sends files in deploy dir

provides "s3" alias (source env.sh) to auto-configure aws
authentication; auth included in tree
bumped apps; mkdir/fix deploy dir
merge down (apps) deploy fix
bumped model-builder; api fixes for SDP
bump; model-builder merge to master; api fixes
bump model-builder; cast for HttpsURLConnection
bump model-builder; corrects GET /sets client
bump model-builder; 325, fix /api/sets, msg fix
bump kam-nav; search nodes fixes
Merge branch 'master' into experimental
signing cert update; re-key from godaddy

steps taken
1) generate keystore with private key

keytool -genkey -alias signing -keyalg RSA -keysize 2048 -keypass
"*snip*" -keystore signing.jks -storepass
"*snip*" -dname "CN=Selventa\, Inc,O=Selventa\,
Inc,C=US,ST=Massachusetts,L=Cambridge"

2) generate csr from keystore

keytool -certreq -v -alias signing -file signing.csr -keystore
signing.jks

3) re-key certificate on GoDaddy using SHA-1 algorithm

SHA-2 is recommended due to Windows constraints being imposed in 2017,
but GoDaddy provides another certificate in the chain for these.  That
certificate is not trusted by default in Java.

4) import certificate chain

keytool -import -trustcacerts -keystore signing.jks -storepass
"*snip*" -alias signing -file cert.pem

more info; https://wiki.selventa.com/display/SDP/Webstart+for+Cytoscape
bump kam-nav; knowledge neighborhood facet update
bump model-builder; save / save as updates
bump kam-nav/model-builder

sdp/kam-nav configuration and knowledge neighborhood updates
bump kam-nav
bumped
bump kam-nav
changes for 1.1.0
bump samskivert
Merge branch 'master' of github.com:Selventa/sdp-cytoscape3

Conflicts:
	env.sh