permissions test matlab script

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
Permissions test script for Manually annotated Database from Petr

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
writeFileAnnotation edit's to write big/huge files as well

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
Read and write file in Chunks

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
Read and write file in chunks_Fix bugs

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
Read and write file in chunks_Fix bugs

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
force remove files not related to this PR

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
Delegate file updating logic to updateOriginalFile

All the logic for setting the name, size, uploading bytes and performing
checksums should now be handled in updateOriginalFile. This function is called
by writeFileAnnotation as well as updateFileAnnotation.

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
Fix call to updateService in writeFileAnnotation

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
Tidy up the M files (unused variables, semicolon)

OME-DCO-1.1-Signed-off-by: Sebastien Besson <seb.besson@gmail.com> (github: sbesson)
mark testInputs integration test as failing
Merge pull request #2788 from mtbc/testInputs-is-flaky

mark testInputs integration test as failing (rebased from dev_5_0)
Merge pull request #2787 from sbesson/rebased/develop/matlab_writeFileAnnotation

Matlab writeFileAnnotation (rebased onto develop)
Update develop submodules

Repository: openmicroscopy/openmicroscopy
Already up-to-date.

Repository: openmicroscopy/bioformats
Updating 63fc1e0..0851191
Merged PRs (fast-forward):
  # PR 1211 joshmoore 'Close IFormatReader copy if not to be used (rebased onto develop)'
  # PR 1208 rleigh-dundee 'docs: Merge xsd-fu prerequisites into build instructions (develop)'
  # PR 1199 melissalinkert 'Nikon .nd2 fixes, part 3 (rebased onto develop)'
  # PR 1193 melissalinkert 'Leica LIF: do not set Channel.Color for RGB images'
  # PR 1192 melissalinkert 'DICOM: fix units for physical sizes'
  # PR 1195 melissalinkert 'OME-TIFF: close helper readers when working with single-plane files (rebased onto develop)'
  # PR 1178 melissalinkert 'Nikon .nd2 fixes, part 2 (rebased onto develop)'
  # PR 1164 melissalinkert 'Add modulo support for LI-FLIM data'
  # PR 1187 melissalinkert 'ScanR: fix exposure time units'
  # PR 1194 melissalinkert 'CZI: prevent NumberFormatExceptions on missing/invalid position values (rebased onto develop)'

Repository: ome/scripts
Updating 9f8a7a0..9771f00
Merged PRs (fast-forward):
  # PR 88 mtbc 'Image from roi (rebased from dev_5_0)'

Repository: openmicroscopy/ome-documentation
Updating 191511b..ce96fa7
Merged PRs (fast-forward):
  # PR 858 hflynn 'Tidy Upgrade page incl. Paris requests for 5.0.3 (rebased onto develop)'
  # PR 861 hflynn 'Fix Dave Duhlman links in Model docs'
  # PR 857 sbesson 'Document orphaned datasets/plates retrieval via getProjects/getScreens (rebased onto develop)'
  # PR 854 mtbc 'Managed repository template path expansions (rebased from dev_5_0)'
  # PR 856 hflynn 'Removing developer standards page'
  # PR 824 sbesson 'OME DCO'
  # PR 834 aleksandra-tarkowska 'Session engine'
  # PR 849 hflynn 'Reformatting VA docs to make them less scary  (rebased onto develop)'
  # PR 846 hflynn 'Insert OMERO sidebar template after page TOC sidebar (rebased onto develop)'
  # PR 850 hflynn 'Re-working OMERO sysadmin index page (rebased onto develop)'
  # PR 843 aleksandra-tarkowska 'adding HTTP response header'
  # PR 845 manics 'Clarify fastcgi (rebased onto develop)'
  # PR 827 aleksandra-tarkowska 'Nginx doc'

Generated by OMERO-5.1-latest-submods#143 (http://ci.openmicroscopy.org/job/OMERO-5.1-latest-submods/143/)