Initial working JavaFX build

First commit for JavaFX GUI that successfully calls a shell script that
initiates ant build and run functions.  Script calling is done on a
separate thread as to not freeze the GUI.  Additional functions still
need to be added, such as reading and displaying the cleaned output
file.
Working JavaFX build

First commit for JavaFX GUI that successfully calls a shell script that
initiates ant build and run functions.  Script calling is done on a
separate thread as to not freeze the GUI.  Additional functions still
need to be added, such as reading and displaying the cleaned output
file.
Working JavaFX Build

First commit for JavaFX GUI that successfully calls a shell script that
initiates ant build and run functions.  Script calling is done on a
separate thread as to not freeze the GUI.  Additional functions still
need to be added, such as reading and displaying the cleaned output
file.
Add working run.xml

Added working run.xml file.
Cleaned up controller

Cleaned up GUI controller code.
Updated HybridRaceTracker

Updated HybridRaceTracker added to enable simplified output.
added some important files

added base_run.xml, which is a template xml file for run.xml and added a
txt with the code in order to read that file then write a new run.xml
Functional build with major code cleanup

First functioning build with cleaned code.
Merge branch 'JavaFX_Build'

Conflicts:
	classes/javato/activetesting/analysis/ObserverForActiveTesting.class

classes/javato/activetesting/common/WeakIdentityHashMap$HashIterator.cla
ss

classes/javato/activetesting/deterministicscheduler/ApproxDeterministicS
cheduler.class
	classes/javato/activetesting/deterministicscheduler/StallBreaker.class
	classes/javato/activetesting/hybridracedetection/CommutativePair.class

classes/javato/activetesting/hybridracedetection/HybridRaceTracker.class
	classes/javato/activetesting/instrumentor/VisitorForActiveTesting.class
	classes/javato/activetesting/lockset/LockSet.class
	classes/javato/activetesting/reentrant/IgnoreRentrantLock.class
	classes/javato/instrumentor/TransformClass.class
	classes/javato/instrumentor/Visitor.class
	src/benchmarks/error.list
	src/benchmarks/error.log
	src/benchmarks/error.time
	src/benchmarks/iidToLine.map
	src/benchmarks/iidToLine.map.html
	src/benchmarks/tmpclasses/JGFAllSizeA.class
	src/benchmarks/tmpclasses/crypt/IDEARunner.class
	src/benchmarks/tmpclasses/crypt/IDEATest.class
	src/benchmarks/tmpclasses/crypt/JGFCryptBench.class
	src/benchmarks/tmpclasses/jgfutil/JGFInstrumentor.class
	src/benchmarks/tmpclasses/jgfutil/JGFTimer.class
	src/benchmarks/tmpclasses/lufact/Barrier.class
	src/benchmarks/tmpclasses/lufact/JGFLUFactBench.class
	src/benchmarks/tmpclasses/lufact/Linpack.class
	src/benchmarks/tmpclasses/lufact/LinpackRunner.class
	src/benchmarks/tmpclasses/series/JGFSeriesBench.class
	src/benchmarks/tmpclasses/series/SeriesRunner.class
	src/benchmarks/tmpclasses/series/SeriesTest.class
	src/benchmarks/tmpclasses/sor/JGFSORBench.class
	src/benchmarks/tmpclasses/sor/SOR.class
	src/benchmarks/tmpclasses/sor/SORRunner.class
	src/benchmarks/tmpclasses/sparsematmult/JGFSparseMatmultBench.class
	src/benchmarks/tmpclasses/sparsematmult/SparseMatmult.class
	src/benchmarks/tmpclasses/sparsematmult/SparseRunner.class