Refactoring
Check for parallel module
Ripping output handling
Ripping all other thread handling
Bringing in parallel module
Getting output
Getting output
Almost right
Standard outputter is correct
Fixed regression tests
Regression test does no longer deadlock.
Fork output writer
Fork output writer
Chunks and progress display
Add template support with RDF and JSON examples
Adding GATK RDF
Show better errror message on sample problem
New exception thrown
Release
Merge branch 'parallel'