Fixed problem with duplicate argument in HP WF
And make sure to replace it with the right var

It's getting late...
HP WF was looking for a incorret dbsnp version
Correct output dir for version log and load xml
Missed white space after new line
Correct path to version file
Update class path to CollectTargetedPcrMetrics
Adding ReportParser to pack apps
Regexp with greedy matching from the start

When parsing then fastq file names for sample info. Fixes #31.
Bumping version to v1.2.0-beta19