fixed ordering for ScoreMatrixBin to order by original rank in windows
Merge pull request #63 from liz-is/development

 fixed ordering for ScoreMatrixBin to order by original rank in windows
Merge branch 'development' of github.com:al2na/genomation into development
scoreMatrix.R:
	- changed the as.factor -> as.vector in line 231

*.Rd:
	- created using roxygen2 v4.0
readAnnotate.R:
	- 437-438, changed IRanges::levels -> levels
readDataTests.R
	- removed the merge
readData.R
	- corrected the wrong colname in readGeneric; line 131:
	  +drop=FALSE
- Vignette: set all eval=FALSE
- code - commented out the examples
Genomation-Manual.knitr.Rnw - removed typo in last function
vignettes/
	- new vignette with all eval=FALSE