Add logger for hibernate debug output
Bugfix: Use different folder for DEV profile
Enhancement: Log error in HDF5GWASDataServlet
Bugfix: Remove newHPC flag
Bugfix: Clear macs,mafs and GVEs list

When uploading a CSV mac, maf and GVE of chromosome 1 was correct. All other
chromosomes were wrong because the macs, mafs and GVEs list wasn't properly
cleared.
Merge branch 'bugfix_gwasviewer'
Update: update apt plugin version
Update: jsr305, jukito and gwtquery versions updated
Update: spring, spring-data,spring-security,querydsl, ehcache, jackson updated
Enhancement: Clean up spring xml files

Include spring-security.xml and spring-acl.xml in applicationContext.xml and include
only the applicationContent.xml in the web.xml
Bugfix: Remove Global Security Method declaration
Bugfix: Remove version number from schema namespaces
Enhancement: Display queries in debug mode and export JMX bean.

HiberbanteStatisticsBean is exported using JMXExporter
Bugfix: Added specific version for jackson-annotations
Merge branch 'lib_update'
Sample config files