CLOSED - task 5: Sort Call Order field numerically, not lexigraphically 
http://github.com/smackers/smackd/issues/issue/5
CLOSES - task 7: Add link on issue to commit 
http://github.com/smackers/smackd/issues/issue/7
Closes #7: Add link on issue to commit 
http://github.com/smackers/smackd/issues/issue/7
Closes #8: Delete all smack markers before running smackd

Now deleting all SmackMarkers before updating view.

Open #6: Add markers to INCLUDEd files

Some work has been done on this.  It currently works, but it's kind of
an ugly workaround.  See #6 comments.
Closes #9: Add preferences page for remote server

Still needs to do something with this preference
Not currently in a stable state, but going to reorganize Jobs, so want a
reference point to fall back on.
Smack execution moved to jobs (both local & remote).  Probably a few
bugs (especially on remote smack side), but seems to be working.s
Updated build path to export json jar file (hopefully)

When plugin installed on reference machine, before this commit, getting
errors about no class def for json stuff.
json still not defined.  Trying again with classpath, include, bin stuff
Trying again with json jar export
After adding to binary build section on build tab
Ran manifest export wizard.  See Export-Package section in MANSIFEST.MF
Ugh
xdf
sdf
Testing again
Testing
Testing again.  Worked last time after movingl./javax.json to
./lib/javax.json...  Trying to figure out how to get it to go here by
default.
Seems like javax.json is properly linked now.  

Now, added logging to investigate null pointer excpt during TraceParser
(line ~104)
New logging to troubleshoot null pointer