modified call to fmp06B* script
minor fixes
modified to grab thresholded copy-number CNMF cluster outputs from firehose
commented out some of the post-processing filtering to keep more associations
when using the --byType option, one of the types may be "ANY"
added some debug statements
updated
pre-processing mods
added feature file argument
Merge branch 'develop' of https://github.com/cancerregulome/gidget into develop