before pull
merged
removed bad file
Merge branch 'master' of https://github.com/HIPS/optofit
before pull
Merge branch 'master' of https://github.com/HIPS/optofit

Conflicts:
	examples/gp_demo.py
	examples/gp_squid_test.py
Added transition noise resampling
Added some of the initialization -- it seems to be getting to a latent state trajectory, but it still needs the Smoothness penalty
Added smoothness, a bit confused about how the latent state interface works...
This seems to thelp, though the cost function is really bad
Merge pull request #1 from atucker/master

Thanks! Merging into master